treeview_taxa
shows pedigree in interactive html
Contents
Syntax
treeview_taxa (taxon, var, info)
Description
First produces pedigree with function pedigree and uses the result to create files /treeview/treeview_taxa.js and treeview_taxa_search.html and /treeview/treeview_taxa.css. Then opens AmPtool/taxa/treeview/treeview_taxa.html in the system browser.
Input:
- taxon: optional character string with a taxon (default 'Animalia')
- var: optional character string with name of variable, or vector with values of variable
- info: optional boolean for background-color-gradients on all nodes (1), or background-colors on leaves only (0, default);
Remarks
Taxon must be a node in the taxonomic tree, see list_taxa Name of variable must be in allStat.mat. If the numerical value is used, the length should equal length(select(taxon)). Construction time for large trees with specified second input may take a while.
Example of use
treeview_taxa('Cladocera');
treeview_taxa(select_taxon('Crustacea',1)); % choose from shown list of all nodes of Crustacea
treeview_taxa(select_taxon('',1)); % choose from shown list of all nodes of Animalia
treeview_taxa('Mammalia', 'kap'); % show distribution of kap (or any other variable in allStat) among mammals
% show distribution of start of development as fraction of age at birth among birds
var = read_stat(select('Aves'), 't_0', 'a_b'); treeview_taxa('Aves', var(:,1)./var(:,2));